与作物种质发掘和遗传育种相关的基因组数据库

与作物种质发掘和遗传育种相关的基因组数据库

各种测序的结果是形成了各种数据的堆积。在进行遗传发掘和利用的时候就会比较的迷茫。Lai等举例总结的这些基因组数据库链接,基本都相关于作物的遗传促进。虽然没有什么新意,但把他们堆积在一起,用的时候会比较的方便。

Database Name Web Link
autoSNPdb https://autosnpdb.appliedbioinformatics.com.au/
Brachypodium database https://www.brachypodium.org/
Brassica genome gateway https://www.brassicagenome.net
Brassica rapa genome database https://brassicadb.org/
DNA Data Bank of Japan (DDBJ) https://ddbj.sakura.ne.jp/
European bioinformatics institute EnsEMBL plants https://plants.ensembl.org/
European Molecular Biology Laboratory (EMBL) nucleotide sequence database https://www.ebi.ac.uk/embl/
GenBank https://www.ncbi.nlm.nih.gov/genbank/
Graingenes https://wheat.pw.usda.gov/
Gramene https://www.gramene.org/
International Crop Information System (ICIS) https://www.icis.cgiar.org
International Nucleotide Sequence Database Collaboration (INSDC) https://www.insdc.org/
Legume Information System (LIS) https://www.comparative-legumes.org/
MaizeGDB https://www.maizegdb.org/
Maize sequence database https://www.maizesequence.org/
Oryzabase https://www.shigen.nig.ac.jp/rice/oryzabase/
Panzea https://www.panzea.org/
Phytozome https://www.phytozome.net/
PlantsDB https://mips.helmholtz-muenchen.de/plant/genomes.jsp
PlantGDB https://www.plantgdb.org/
The Plant Ontology https://www.plantontology.org/
Plaza https://bioinformatics.psb.ugent.be/plaza/
Rice Genome Annotation Project https://rice.plantbiology.msu.edu/
SSR Primer https://flora.acpfg.com.au/ssrprimer2/
SSR taxonomy tree https://appliedbioinformatics.com.au/projects/ssrtaxonomy/php/
SOL Genomics Network (SGN) https://solgenomics.net/
SoyBase https://soybase.org/
TAGdb https://flora.acpfg.com.au/tagdb/
The Crop Expressed Sequence Tag database, CR-EST https://pgrc.ipk-gatersleben.de/cr-est/
The Triticeae Repeat Sequence Database (TREP) https://wheat.pw.usda.gov/ITMI/Repeats/
Wheat genome information https://www.wheatgenome.info

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